Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2383001..2383269 | Replicon | chromosome |
| Accession | NZ_CP103557 | ||
| Organism | Escherichia coli O25b:H4-ST131 strain 4993 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2383129..2383231 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2383001..2383269 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T49_RS11860 | 2379554..2380216 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M5T49_RS11865 | 2380240..2380896 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5T49_RS11870 | 2380998..2381228 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5T49_RS11875 | 2381367..2381741 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M5T49_RS11880 | 2381745..2382617 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| M5T49_RS11885 | 2382630..2382971 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2383001..2383269 | - | 269 | - | - | Antitoxin |
| - | 2383129..2383231 | + | 103 | - | - | Toxin |
| M5T49_RS11890 | 2383366..2384022 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| M5T49_RS11895 | 2384023..2384214 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M5T49_RS11900 | 2384319..2384555 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M5T49_RS11905 | 2384672..2386111 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T255490 NZ_CP103557:2383129-2383231 [Escherichia coli O25b:H4-ST131]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT255490 NZ_CP103557:c2383269-2383001 [Escherichia coli O25b:H4-ST131]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
