Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2199608..2199776 | Replicon | chromosome |
| Accession | NZ_CP103554 | ||
| Organism | Klebsiella michiganensis strain 5088 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2199666..2199769 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2199608..2199776 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5R35_RS10455 (M5R35_10455) | 2194735..2196795 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| M5R35_RS10460 (M5R35_10460) | 2196802..2197461 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| M5R35_RS10465 (M5R35_10465) | 2197540..2197770 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| M5R35_RS10470 (M5R35_10470) | 2197906..2198280 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| M5R35_RS10475 (M5R35_10475) | 2198285..2199154 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| M5R35_RS10480 (M5R35_10480) | 2199171..2199509 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2199608..2199776 | - | 169 | - | - | Antitoxin |
| - | 2199666..2199769 | + | 104 | - | - | Toxin |
| M5R35_RS10485 (M5R35_10485) | 2199894..2200853 | - | 960 | WP_014229836.1 | spore coat protein U domain-containing protein | - |
| M5R35_RS10490 (M5R35_10490) | 2200868..2203198 | - | 2331 | WP_014229835.1 | fimbria/pilus outer membrane usher protein | - |
| M5R35_RS10495 (M5R35_10495) | 2203201..2203965 | - | 765 | WP_014229834.1 | fimbria/pilus periplasmic chaperone | - |
| M5R35_RS10500 (M5R35_10500) | 2203984..2204502 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255472 NZ_CP103554:2199666-2199769 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT255472 NZ_CP103554:c2199776-2199608 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
