Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2002432..2002577 | Replicon | chromosome |
| Accession | NZ_CP103548 | ||
| Organism | Klebsiella pneumoniae strain 3987 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2002439..2002541 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2002432..2002577 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T27_RS09800 | 1997964..1999397 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M5T27_RS09805 | 1999513..1999752 | + | 240 | WP_002911393.1 | YebV family protein | - |
| M5T27_RS09810 | 1999850..2000041 | + | 192 | WP_002911395.1 | YebW family protein | - |
| M5T27_RS09815 | 2000038..2000691 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| M5T27_RS09820 | 2000848..2001816 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M5T27_RS09825 | 2001921..2002064 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2002432..2002577 | + | 146 | - | - | Antitoxin |
| - | 2002439..2002541 | - | 103 | - | - | Toxin |
| M5T27_RS09830 | 2002700..2003038 | - | 339 | WP_002911404.1 | YebY family protein | - |
| M5T27_RS09835 | 2003055..2003924 | - | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| M5T27_RS09840 | 2003928..2004302 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M5T27_RS09845 | 2004415..2004645 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M5T27_RS09850 | 2004724..2005383 | + | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| M5T27_RS09855 | 2005387..2007447 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T255437 NZ_CP103548:c2002541-2002439 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT255437 NZ_CP103548:2002432-2002577 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
