Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3442552..3443170 Replicon chromosome
Accession NZ_CP103544
Organism Escherichia coli strain 3036

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag M5S54_RS16645 Protein ID WP_001291435.1
Coordinates 3442952..3443170 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag M5S54_RS16640 Protein ID WP_000344800.1
Coordinates 3442552..3442926 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M5S54_RS16630 (3437641) 3437641..3438834 + 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
M5S54_RS16635 (3438857) 3438857..3442006 + 3150 WP_001132469.1 efflux RND transporter permease AcrB -
M5S54_RS16640 (3442552) 3442552..3442926 + 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
M5S54_RS16645 (3442952) 3442952..3443170 + 219 WP_001291435.1 HHA domain-containing protein Toxin
M5S54_RS16650 (3443342) 3443342..3443893 + 552 WP_000102568.1 maltose O-acetyltransferase -
M5S54_RS16655 (3444009) 3444009..3444479 + 471 WP_000136192.1 YlaC family protein -
M5S54_RS16660 (3444643) 3444643..3446193 + 1551 WP_001299455.1 cyclic-guanylate-specific phosphodiesterase PdeB -
M5S54_RS16665 (3446235) 3446235..3446588 - 354 WP_000878140.1 DUF1428 domain-containing protein -
M5S54_RS16675 (3446967) 3446967..3447278 + 312 WP_000409911.1 MGMT family protein -
M5S54_RS16680 (3447309) 3447309..3447881 - 573 WP_000779831.1 YbaY family lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T255412 WP_001291435.1 NZ_CP103544:3442952-3443170 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT255412 WP_000344800.1 NZ_CP103544:3442552-3442926 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References