Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 4322745..4323242 Replicon chromosome
Accession NZ_CP103515
Organism Escherichia coli strain 5444

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag M5S96_RS21210 Protein ID WP_001173343.1
Coordinates 4322745..4322918 (-) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag M5S96_RS21215 Protein ID WP_000398619.1
Coordinates 4322946..4323242 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M5S96_RS21200 (4319415) 4319415..4320872 + 1458 WP_000856829.1 dipeptide/tripeptide permease DtpC -
M5S96_RS21205 (4321109) 4321109..4322626 + 1518 WP_001295074.1 lysine--tRNA ligase -
M5S96_RS21210 (4322745) 4322745..4322918 - 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
M5S96_RS21215 (4322946) 4322946..4323242 - 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
M5S96_RS21220 (4323469) 4323469..4323741 - 273 WP_000405651.1 GNAT family N-acetyltransferase -
M5S96_RS21225 (4323753) 4323753..4323983 - 231 WP_000371704.1 4Fe-4S mono-cluster protein YjdI -
M5S96_RS21230 (4324164) 4324164..4325795 + 1632 WP_001216477.1 sensor histidine kinase -
M5S96_RS21235 (4325792) 4325792..4326511 + 720 WP_000611288.1 two-component system response regulator DcuR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4277470..4323242 45772


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T255281 WP_001173343.1 NZ_CP103515:c4322918-4322745 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT255281 WP_000398619.1 NZ_CP103515:c4323242-4322946 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References