Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2730698..2730907 | Replicon | chromosome |
| Accession | NZ_CP103494 | ||
| Organism | Enterobacter hormaechei strain 70 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2730711..2730814 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2730698..2730907 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T15_RS13110 (M5T15_13110) | 2726966..2728414 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M5T15_RS13115 (M5T15_13115) | 2728521..2728760 | + | 240 | WP_003859885.1 | YebV family protein | - |
| M5T15_RS13120 (M5T15_13120) | 2728795..2729439 | - | 645 | WP_017384338.1 | protein-serine/threonine phosphatase | - |
| M5T15_RS13125 (M5T15_13125) | 2729607..2730587 | + | 981 | WP_045142106.1 | VirK/YbjX family protein | - |
| M5T15_RS13130 (M5T15_13130) | 2730633..2730830 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2730698..2730907 | + | 210 | - | - | Antitoxin |
| - | 2730711..2730814 | - | 104 | - | - | Toxin |
| M5T15_RS13135 (M5T15_13135) | 2730956..2731294 | - | 339 | WP_003859787.1 | YebY family protein | - |
| M5T15_RS13140 (M5T15_13140) | 2731311..2732180 | - | 870 | WP_045142107.1 | copper homeostasis membrane protein CopD | - |
| M5T15_RS13145 (M5T15_13145) | 2732182..2732553 | - | 372 | WP_045142108.1 | CopC domain-containing protein YobA | - |
| M5T15_RS13150 (M5T15_13150) | 2732691..2732921 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| M5T15_RS13155 (M5T15_13155) | 2733033..2733683 | + | 651 | WP_045142109.1 | carbon-nitrogen hydrolase family protein | - |
| M5T15_RS13160 (M5T15_13160) | 2733708..2734370 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255172 NZ_CP103494:c2730814-2730711 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT255172 NZ_CP103494:2730698-2730907 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAGCCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAGCCGC
