Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2272052..2272323 | Replicon | chromosome |
| Accession | NZ_CP103479 | ||
| Organism | Escherichia coli strain 4621 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2272182..2272285 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2272052..2272323 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T46_RS10765 | 2268607..2269269 | - | 663 | WP_000944239.1 | exodeoxyribonuclease X | - |
| M5T46_RS10770 | 2269293..2269949 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5T46_RS10775 | 2270051..2270281 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5T46_RS10780 | 2270420..2270794 | + | 375 | WP_000168749.1 | CopC domain-containing protein YobA | - |
| M5T46_RS10785 | 2270798..2271670 | + | 873 | WP_000879329.1 | copper homeostasis membrane protein CopD | - |
| M5T46_RS10790 | 2271683..2272024 | + | 342 | WP_000976490.1 | YebY family protein | - |
| - | 2272052..2272323 | - | 272 | - | - | Antitoxin |
| - | 2272182..2272285 | + | 104 | - | - | Toxin |
| M5T46_RS10795 | 2272420..2273076 | + | 657 | WP_000812713.1 | protein-serine/threonine phosphatase | - |
| M5T46_RS10800 | 2273077..2273268 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M5T46_RS10805 | 2273373..2273609 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M5T46_RS10810 | 2273727..2275166 | - | 1440 | WP_024176277.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2264742..2288163 | 23421 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255131 NZ_CP103479:2272182-2272285 [Escherichia coli]
GGCAAGGCATCTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCATCTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT255131 NZ_CP103479:c2272323-2272052 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGATGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGATGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
