Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2225825..2226096 Replicon chromosome
Accession NZ_CP103468
Organism Escherichia coli strain 4973

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2225955..2226058 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2225825..2226096 (-)

Genomic Context


M5S50_RS10495M5S50_RS10500M5S50_RS10505--M5S50_RS10510M5S50_RS10480M5S50_RS10485M5S50_RS10490--M5S50_RS10515M5S50_RS10520M5S50_RS10525
Location: 2224193..2224567 (375 bp)
Type: Others
Protein ID: WP_022645803.1
Location: 2224571..2225443 (873 bp)
Type: Others
Protein ID: WP_022645802.1
Location: 2225456..2225797 (342 bp)
Type: Others
Protein ID: WP_000976472.1
Location: 2225955..2226058 (104 bp)
Type: Toxin
Protein ID: -
Location: 2226193..2226849 (657 bp)
Type: Others
Protein ID: WP_022645801.1
Location: 2222380..2223042 (663 bp)
Type: Others
Protein ID: WP_000944256.1
Location: 2223066..2223722 (657 bp)
Type: Others
Protein ID: WP_000011651.1
Location: 2223824..2224054 (231 bp)
Type: Others
Protein ID: WP_000916763.1
Location: 2225825..2226096 (272 bp)
Type: Antitoxin
Protein ID: -
Location: 2226850..2227041 (192 bp)
Type: Others
Protein ID: WP_001296140.1
Location: 2227146..2227382 (237 bp)
Type: Others
Protein ID: WP_001295499.1
Location: 2227500..2228939 (1440 bp)
Type: Others
Protein ID: WP_024181822.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
M5S50_RS104802222380..2223042-663WP_000944256.1exodeoxyribonuclease X-
M5S50_RS104852223066..2223722-657WP_000011651.1carbon-nitrogen hydrolase family protein YobB-
M5S50_RS104902223824..2224054-231WP_000916763.1DNA polymerase III subunit theta-
M5S50_RS104952224193..2224567+375WP_022645803.1CopC domain-containing protein YobA-
M5S50_RS105002224571..2225443+873WP_022645802.1copper homeostasis membrane protein CopD-
M5S50_RS105052225456..2225797+342WP_000976472.1YebY family protein-
-2225825..2226096-272--Antitoxin
-2225955..2226058+104--Toxin
M5S50_RS105102226193..2226849+657WP_022645801.1protein-serine/threonine phosphatase-
M5S50_RS105152226850..2227041-192WP_001296140.1YebW family protein-
M5S50_RS105202227146..2227382-237WP_001295499.1YebV family protein-
M5S50_RS105252227500..2228939-1440WP_024181822.116S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF-

Associated MGEs


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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T255102 NZ_CP103468:2225955-2226058 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT255102 NZ_CP103468:c2226096-2225825 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References