Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2225825..2226096 | Replicon | chromosome |
| Accession | NZ_CP103468 | ||
| Organism | Escherichia coli strain 4973 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2225955..2226058 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2225825..2226096 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S50_RS10480 | 2222380..2223042 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M5S50_RS10485 | 2223066..2223722 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5S50_RS10490 | 2223824..2224054 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5S50_RS10495 | 2224193..2224567 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| M5S50_RS10500 | 2224571..2225443 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| M5S50_RS10505 | 2225456..2225797 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2225825..2226096 | - | 272 | - | - | Antitoxin |
| - | 2225955..2226058 | + | 104 | - | - | Toxin |
| M5S50_RS10510 | 2226193..2226849 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| M5S50_RS10515 | 2226850..2227041 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M5S50_RS10520 | 2227146..2227382 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M5S50_RS10525 | 2227500..2228939 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255102 NZ_CP103468:2225955-2226058 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT255102 NZ_CP103468:c2226096-2225825 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
