Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2047765..2047909 | Replicon | chromosome |
| Accession | NZ_CP103420 | ||
| Organism | Klebsiella variicola strain KV1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2047801..2047903 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2047765..2047909 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYO12_RS10320 | 2042895..2044955 | + | 2061 | WP_259073933.1 | oligopeptidase B | - |
| NYO12_RS10325 | 2044959..2045618 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| NYO12_RS10330 | 2045697..2045927 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| NYO12_RS10335 | 2046041..2046415 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| NYO12_RS10340 | 2046419..2047288 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| NYO12_RS10345 | 2047305..2047643 | + | 339 | WP_259073934.1 | YebY family protein | - |
| - | 2047765..2047909 | - | 145 | - | - | Antitoxin |
| - | 2047801..2047903 | + | 103 | - | - | Toxin |
| NYO12_RS10350 | 2048350..2049044 | + | 695 | WP_110192083.1 | IS1 family transposase | - |
| NYO12_RS10355 | 2049062..2049205 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| NYO12_RS10360 | 2049309..2050277 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| NYO12_RS10365 | 2050434..2051087 | + | 654 | WP_259073937.1 | protein-serine/threonine phosphatase | - |
| NYO12_RS10370 | 2051084..2051275 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NYO12_RS10375 | 2051373..2051612 | - | 240 | WP_002911393.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T255032 NZ_CP103420:2047801-2047903 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT255032 NZ_CP103420:c2047909-2047765 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
