Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1958258..1958402 | Replicon | chromosome |
| Accession | NZ_CP103419 | ||
| Organism | Klebsiella variicola strain KV4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1958294..1958396 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1958258..1958402 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYO13_RS09405 (NYO13_09405) | 1953388..1955448 | + | 2061 | WP_048330475.1 | oligopeptidase B | - |
| NYO13_RS09410 (NYO13_09410) | 1955452..1956111 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| NYO13_RS09415 (NYO13_09415) | 1956190..1956420 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| NYO13_RS09420 (NYO13_09420) | 1956534..1956908 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| NYO13_RS09425 (NYO13_09425) | 1956912..1957781 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| NYO13_RS09430 (NYO13_09430) | 1957798..1958136 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1958258..1958402 | - | 145 | - | - | Antitoxin |
| - | 1958294..1958396 | + | 103 | - | - | Toxin |
| NYO13_RS09435 (NYO13_09435) | 1958781..1958924 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| NYO13_RS09440 (NYO13_09440) | 1959028..1959996 | - | 969 | WP_163595291.1 | VirK/YbjX family protein | - |
| NYO13_RS09445 (NYO13_09445) | 1960153..1960806 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| NYO13_RS09450 (NYO13_09450) | 1960803..1960994 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NYO13_RS09455 (NYO13_09455) | 1961092..1961331 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NYO13_RS09460 (NYO13_09460) | 1961447..1962880 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T255019 NZ_CP103419:1958294-1958396 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT255019 NZ_CP103419:c1958402-1958258 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
