Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | hipBA/HipA-HipB |
Location | 2081939..2083500 | Replicon | chromosome |
Accession | NZ_CP103401 | ||
Organism | Pantoea agglomerans strain CHTF15 |
Toxin (Protein)
Gene name | hipA | Uniprot ID | - |
Locus tag | NYF24_RS09685 | Protein ID | WP_258992022.1 |
Coordinates | 2082187..2083500 (+) | Length | 438 a.a. |
Antitoxin (Protein)
Gene name | hipB | Uniprot ID | - |
Locus tag | NYF24_RS09680 | Protein ID | WP_010244879.1 |
Coordinates | 2081939..2082187 (+) | Length | 83 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NYF24_RS09660 (2077186) | 2077186..2079411 | + | 2226 | WP_258992019.1 | iron ABC transporter permease | - |
NYF24_RS09665 (2079408) | 2079408..2080469 | + | 1062 | WP_258992020.1 | ABC transporter ATP-binding protein | - |
NYF24_RS09670 (2080493) | 2080493..2081287 | + | 795 | WP_256849264.1 | inositol monophosphatase family protein | - |
NYF24_RS09675 (2081321) | 2081321..2081758 | - | 438 | WP_060680221.1 | GNAT family N-acetyltransferase | - |
NYF24_RS09680 (2081939) | 2081939..2082187 | + | 249 | WP_010244879.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin |
NYF24_RS09685 (2082187) | 2082187..2083500 | + | 1314 | WP_258992022.1 | type II toxin-antitoxin system HipA family toxin | Toxin |
NYF24_RS09690 (2083605) | 2083605..2083811 | + | 207 | WP_010244885.1 | type II toxin-antitoxin system MqsA family antitoxin | - |
NYF24_RS09695 (2083983) | 2083983..2085404 | + | 1422 | WP_258992023.1 | M24 family metallopeptidase | - |
NYF24_RS09700 (2085480) | 2085480..2087525 | + | 2046 | WP_010244891.1 | FUSC family protein | - |
NYF24_RS09705 (2087758) | 2087758..2088093 | - | 336 | WP_163637049.1 | gamma-glutamylcyclotransferase family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 438 a.a. Molecular weight: 49162.79 Da Isoelectric Point: 8.8383
>T254994 WP_258992022.1 NZ_CP103401:2082187-2083500 [Pantoea agglomerans]
MQRLIAWMNGERVGVLTRQRNGAHEFQYDTGWLSNPLSRPLSLSMPLQVKALTSHAVINFFDNLLPDSPLIRDRIVARYQ
IKSRQPFDLLQEVGRDSVGATMLLLPDMPLPALQARYEVLDETRLESVLSAYQSDIPLGMLREETDFRISVAGAQEKTAL
LLTNEGWSIPAGATPTSHIIKLPIGEIKQPAATLDMRESVENEYLCLALARALGIDVPQATIIRAGQMRALAVERFDRRW
SRDKTRLIRLPQEDFCQALGLPSSTKYESDGGPGIAEIMQILMGSSNAIEDRYRFMMFQVFQWLIGATDGHAKNFSLFIE
RGGSYRLTPFYDVISAYPVLGGTGLNKRALKLAMGLRATKGKKTEIDKIFPRHFIATAKSVSFDRDSLQQIFDFFIKAFP
QAVVSVRDALPPDFPQHIADAIFSHSLIMLERLRHKE
MQRLIAWMNGERVGVLTRQRNGAHEFQYDTGWLSNPLSRPLSLSMPLQVKALTSHAVINFFDNLLPDSPLIRDRIVARYQ
IKSRQPFDLLQEVGRDSVGATMLLLPDMPLPALQARYEVLDETRLESVLSAYQSDIPLGMLREETDFRISVAGAQEKTAL
LLTNEGWSIPAGATPTSHIIKLPIGEIKQPAATLDMRESVENEYLCLALARALGIDVPQATIIRAGQMRALAVERFDRRW
SRDKTRLIRLPQEDFCQALGLPSSTKYESDGGPGIAEIMQILMGSSNAIEDRYRFMMFQVFQWLIGATDGHAKNFSLFIE
RGGSYRLTPFYDVISAYPVLGGTGLNKRALKLAMGLRATKGKKTEIDKIFPRHFIATAKSVSFDRDSLQQIFDFFIKAFP
QAVVSVRDALPPDFPQHIADAIFSHSLIMLERLRHKE
Download Length: 1314 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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