Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1871090..1871238 | Replicon | chromosome |
| Accession | NC_015761 | ||
| Organism | Salmonella bongori NCTC 12419 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1871097..1871200 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1871090..1871238 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SBG_RS08795 | 1867254..1868015 | - | 762 | WP_043942392.1 | type III secretion system guanine nucleotide exchange factor SopE2 | - |
| SBG_RS08800 | 1868602..1869078 | + | 477 | WP_000076084.1 | hypothetical protein | - |
| SBG_RS08805 | 1869670..1870812 | + | 1143 | WP_000227846.1 | lipopolysaccharide N-acetylglucosaminyltransferase | - |
| - | 1871090..1871238 | + | 149 | - | - | Antitoxin |
| - | 1871097..1871200 | - | 104 | - | - | Toxin |
| SBG_RS08815 | 1871344..1871694 | - | 351 | WP_000746718.1 | YebY family protein | - |
| SBG_RS08820 | 1871711..1872586 | - | 876 | WP_000979682.1 | copper homeostasis membrane protein CopD | - |
| SBG_RS08825 | 1872587..1872961 | - | 375 | WP_000885911.1 | CopC domain-containing protein YobA | - |
| SBG_RS08830 | 1873099..1873329 | + | 231 | WP_000856226.1 | DNA polymerase III subunit theta | - |
| SBG_RS08835 | 1873437..1874093 | + | 657 | WP_000100264.1 | carbon-nitrogen hydrolase family protein | - |
| SBG_RS08840 | 1874117..1874806 | + | 690 | WP_000944290.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T25496 NC_015761:c1871200-1871097 [Salmonella bongori NCTC 12419]
GGCAGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 149 bp
>AT25496 NC_015761:1871090-1871238 [Salmonella bongori NCTC 12419]
AACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGTTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
AACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGTTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
