Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2018267..2018412 | Replicon | chromosome |
| Accession | NZ_CP103315 | ||
| Organism | Klebsiella pneumoniae strain hvKP12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2018303..2018405 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2018267..2018412 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NXZ72_RS09895 (NXZ72_09895) | 2013397..2015457 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NXZ72_RS09900 (NXZ72_09900) | 2015461..2016120 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NXZ72_RS09905 (NXZ72_09905) | 2016199..2016429 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NXZ72_RS09910 (NXZ72_09910) | 2016542..2016916 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NXZ72_RS09915 (NXZ72_09915) | 2016920..2017789 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| NXZ72_RS09920 (NXZ72_09920) | 2017806..2018144 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2018267..2018412 | - | 146 | - | - | Antitoxin |
| - | 2018303..2018405 | + | 103 | - | - | Toxin |
| NXZ72_RS09925 (NXZ72_09925) | 2018780..2018923 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NXZ72_RS09930 (NXZ72_09930) | 2019028..2019996 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NXZ72_RS09935 (NXZ72_09935) | 2020153..2020806 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NXZ72_RS09940 (NXZ72_09940) | 2020803..2020994 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NXZ72_RS09945 (NXZ72_09945) | 2021092..2021331 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NXZ72_RS09950 (NXZ72_09950) | 2021447..2022880 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T254914 NZ_CP103315:2018303-2018405 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT254914 NZ_CP103315:c2018412-2018267 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
