Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2985061..2985332 | Replicon | chromosome |
| Accession | NZ_CP103295 | ||
| Organism | Escherichia coli strain 2e | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2985099..2985202 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2985061..2985332 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NW892_RS14355 | 2982218..2983657 | + | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NW892_RS14360 | 2983775..2984011 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NW892_RS14365 | 2984116..2984307 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NW892_RS14370 | 2984308..2984964 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2985061..2985332 | + | 272 | - | - | Antitoxin |
| - | 2985099..2985202 | - | 104 | - | - | Toxin |
| NW892_RS14375 | 2985360..2985701 | - | 342 | WP_000976492.1 | YebY family protein | - |
| NW892_RS14380 | 2985714..2986586 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| NW892_RS14385 | 2986590..2986964 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NW892_RS14390 | 2987103..2987333 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NW892_RS14395 | 2987435..2988091 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NW892_RS14400 | 2988115..2988777 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T254864 NZ_CP103295:c2985202-2985099 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT254864 NZ_CP103295:2985061-2985332 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
