Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1901359..1901504 | Replicon | chromosome |
| Accession | NZ_CP102993 | ||
| Organism | Klebsiella pneumoniae strain KPA3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1901395..1901497 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1901359..1901504 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NW255_RS09215 | 1896489..1898549 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NW255_RS09220 | 1898553..1899212 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| NW255_RS09225 | 1899291..1899521 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NW255_RS09230 | 1899634..1900008 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NW255_RS09235 | 1900012..1900881 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NW255_RS09240 | 1900898..1901236 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1901359..1901504 | - | 146 | - | - | Antitoxin |
| - | 1901395..1901497 | + | 103 | - | - | Toxin |
| NW255_RS09245 | 1901873..1902016 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NW255_RS09250 | 1902121..1903089 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NW255_RS09255 | 1903246..1903899 | + | 654 | WP_258825667.1 | protein-serine/threonine phosphatase | - |
| NW255_RS09260 | 1903896..1904087 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NW255_RS09265 | 1904185..1904424 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NW255_RS09270 | 1904540..1905973 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T254813 NZ_CP102993:1901395-1901497 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT254813 NZ_CP102993:c1901504-1901359 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
