Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/HTH_IclR(antitoxin)
Location 5611592..5613297 Replicon chromosome
Accession NZ_CP102951
Organism Pseudomonas sp. LS1212

Toxin (Protein)


Gene name doc Uniprot ID -
Locus tag NVV94_RS26310 Protein ID WP_258445179.1
Coordinates 5611592..5612473 (+) Length 294 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID -
Locus tag NVV94_RS26315 Protein ID WP_258445180.1
Coordinates 5612470..5613297 (+) Length 276 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Alpha/beta hydrolase fold-1

(45-270)

Antitoxin

Transcription regulator IclR, N-terminal

(19-68)


Sequences

Toxin        


Download         Length: 294 a.a.        Molecular weight: 30857.33 Da        Isoelectric Point: 6.6790

>T254585 WP_258445179.1 NZ_CP102951:5611592-5612473 [Pseudomonas sp. LS1212]
MQPAIFNHDPAPTAKLEALLDSQFAQRELAVDDGRLAIREVGTGPAIVLLHGIGSGAASWLQVALALSQDARVIAWDAPG
YGDSTPLAHPAPSAMDYAGRLLHMLDALGIETCVLVGHSLGALTATALASSQPHRVSRLVLISPARGYGDPARETQRQQV
RAKRLQTLECLGIAQMAHERCAHMLSSRASSSALAWVQWNMSRLNPAGYRQAIELLCGDDLLRHAPLSVPCEVHCGEADA
ITAPEACHGLAKSLAASFSLIPDAGHASPIEQPIVVAGRLAHALKESLTGSAL

Download         Length: 882 bp

Antitoxin


Download         Length: 276 a.a.        Molecular weight: 30726.24 Da        Isoelectric Point: 6.3488

>AT254585 WP_258445180.1 NZ_CP102951:5612470-5613297 [Pseudomonas sp. LS1212]
MNDSDLLKDTQDKYIVPGLERGLLLLCEFSRQNRTLTAPELARRLELPRSTIFRLLTTLETMGFVTRSGNEYRLGMSVLR
LGFEYLASLELTELGQPLLARLCDRLNYPSNLVVRDGRSIVYVAKVSPPSVFSSAVNVGTRLPAHATVLGRILLEDLTLA
ELRDLYPEDHLEQYSPCTPKTVLELFDLVQGDRQRGFVSGEGFFESAISTVAAPVRDHTSRIVAALGVTIPTVQIGHVNF
EELLSQVRRSADELSRLLNYTPNVGHNRVTALMRD

Download         Length: 828 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References