Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2796674..2796818 | Replicon | chromosome |
| Accession | NZ_CP102932 | ||
| Organism | Enterobacter sp. Crenshaw | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2796680..2796783 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2796674..2796818 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NWV12_RS13375 (NWV12_13375) | 2791832..2793280 | + | 1449 | WP_197736957.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NWV12_RS13380 (NWV12_13380) | 2793387..2793626 | + | 240 | WP_008500472.1 | YebV family protein | - |
| NWV12_RS13385 (NWV12_13385) | 2793661..2794305 | - | 645 | WP_048979907.1 | protein-serine/threonine phosphatase | - |
| NWV12_RS13390 (NWV12_13390) | 2794471..2795412 | + | 942 | WP_048979909.1 | VirK/YbjX family protein | - |
| NWV12_RS13395 (NWV12_13395) | 2795586..2796482 | + | 897 | WP_048979915.1 | benzoate transporter | - |
| - | 2796674..2796818 | + | 145 | - | - | Antitoxin |
| - | 2796680..2796783 | - | 104 | - | - | Toxin |
| NWV12_RS13400 (NWV12_13400) | 2796922..2797260 | - | 339 | WP_033145840.1 | YebY family protein | - |
| NWV12_RS13405 (NWV12_13405) | 2797277..2798146 | - | 870 | WP_048979917.1 | copper homeostasis membrane protein CopD | - |
| NWV12_RS13410 (NWV12_13410) | 2798148..2798519 | - | 372 | WP_048979919.1 | CopC domain-containing protein YobA | - |
| NWV12_RS13415 (NWV12_13415) | 2798656..2798886 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| NWV12_RS13420 (NWV12_13420) | 2798997..2799647 | + | 651 | WP_048979922.1 | carbon-nitrogen hydrolase family protein | - |
| NWV12_RS13425 (NWV12_13425) | 2799672..2800334 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T254491 NZ_CP102932:c2796783-2796680 [Enterobacter sp. Crenshaw]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT254491 NZ_CP102932:2796674-2796818 [Enterobacter sp. Crenshaw]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
