Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1896666..1896813 | Replicon | chromosome |
| Accession | NZ_CP102921 | ||
| Organism | Klebsiella quasipneumoniae strain K18-45 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1896707..1896809 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1896666..1896813 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NWF33_RS09215 | 1891801..1893861 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| NWF33_RS09220 | 1893865..1894524 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| NWF33_RS09225 | 1894603..1894833 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NWF33_RS09230 | 1894946..1895320 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| NWF33_RS09235 | 1895324..1896193 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| NWF33_RS09240 | 1896210..1896548 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1896666..1896813 | - | 148 | - | - | Antitoxin |
| - | 1896707..1896809 | + | 103 | - | - | Toxin |
| NWF33_RS09245 | 1897197..1897340 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| NWF33_RS09250 | 1897444..1898412 | - | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| NWF33_RS09255 | 1898569..1899240 | + | 672 | WP_017900212.1 | protein-serine/threonine phosphatase | - |
| NWF33_RS09260 | 1899237..1899428 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NWF33_RS09265 | 1899526..1899765 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NWF33_RS09270 | 1899882..1901315 | - | 1434 | WP_017900211.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T254451 NZ_CP102921:1896707-1896809 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT254451 NZ_CP102921:c1896813-1896666 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
