Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1950364..1950511 | Replicon | chromosome |
| Accession | NZ_CP102898 | ||
| Organism | Klebsiella quasipneumoniae strain KW1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1950405..1950507 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1950364..1950511 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NWT83_RS09670 | 1945499..1947559 | + | 2061 | WP_065881164.1 | oligopeptidase B | - |
| NWT83_RS09675 | 1947563..1948222 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| NWT83_RS09680 | 1948301..1948531 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NWT83_RS09685 | 1948644..1949018 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| NWT83_RS09690 | 1949022..1949891 | + | 870 | WP_048297809.1 | copper homeostasis membrane protein CopD | - |
| NWT83_RS09695 | 1949908..1950246 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1950364..1950511 | - | 148 | - | - | Antitoxin |
| - | 1950405..1950507 | + | 103 | - | - | Toxin |
| NWT83_RS09700 | 1950886..1951029 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| NWT83_RS09705 | 1951130..1952098 | - | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| NWT83_RS09710 | 1952255..1952908 | + | 654 | WP_023290232.1 | protein-serine/threonine phosphatase | - |
| NWT83_RS09715 | 1952905..1953096 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NWT83_RS09720 | 1953194..1953433 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NWT83_RS09725 | 1953549..1954979 | - | 1431 | WP_065881171.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T254431 NZ_CP102898:1950405-1950507 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT254431 NZ_CP102898:c1950511-1950364 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
