Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1878846..1878990 | Replicon | chromosome |
| Accession | NZ_CP102893 | ||
| Organism | Klebsiella quasipneumoniae strain KA1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1878882..1878984 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1878846..1878990 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NWT75_RS09075 | 1873976..1876036 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| NWT75_RS09080 | 1876040..1876699 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| NWT75_RS09085 | 1876778..1877008 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| NWT75_RS09090 | 1877122..1877496 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| NWT75_RS09095 | 1877500..1878369 | + | 870 | Protein_1773 | copper homeostasis membrane protein CopD | - |
| NWT75_RS09100 | 1878386..1878724 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1878846..1878990 | - | 145 | - | - | Antitoxin |
| - | 1878882..1878984 | + | 103 | - | - | Toxin |
| NWT75_RS09105 | 1879369..1879512 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| NWT75_RS09110 | 1879616..1880584 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| NWT75_RS09115 | 1880741..1881394 | + | 654 | WP_110244977.1 | protein-serine/threonine phosphatase | - |
| NWT75_RS09120 | 1881391..1881582 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NWT75_RS09125 | 1881680..1881919 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NWT75_RS09130 | 1882035..1883468 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T254419 NZ_CP102893:1878882-1878984 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT254419 NZ_CP102893:c1878990-1878846 [Klebsiella quasipneumoniae]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
