Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1907402..1907547 | Replicon | chromosome |
| Accession | NZ_CP102889 | ||
| Organism | Klebsiella pneumoniae strain KW2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1907438..1907540 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1907402..1907547 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NWT79_RS09190 (NWT79_09190) | 1902532..1904592 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NWT79_RS09195 (NWT79_09195) | 1904596..1905255 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NWT79_RS09200 (NWT79_09200) | 1905334..1905564 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NWT79_RS09205 (NWT79_09205) | 1905677..1906051 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NWT79_RS09210 (NWT79_09210) | 1906055..1906924 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NWT79_RS09215 (NWT79_09215) | 1906941..1907279 | + | 339 | WP_075647430.1 | YebY family protein | - |
| - | 1907402..1907547 | - | 146 | - | - | Antitoxin |
| - | 1907438..1907540 | + | 103 | - | - | Toxin |
| NWT79_RS09220 (NWT79_09220) | 1907916..1908059 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NWT79_RS09225 (NWT79_09225) | 1908164..1909132 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| NWT79_RS09230 (NWT79_09230) | 1909289..1909942 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| NWT79_RS09235 (NWT79_09235) | 1909939..1910130 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NWT79_RS09240 (NWT79_09240) | 1910228..1910467 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NWT79_RS09245 (NWT79_09245) | 1910583..1912016 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T254393 NZ_CP102889:1907438-1907540 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT254393 NZ_CP102889:c1907547-1907402 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
