Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1936697..1936842 | Replicon | chromosome |
| Accession | NZ_CP102869 | ||
| Organism | Klebsiella pneumoniae strain KA2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1936733..1936835 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1936697..1936842 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NWT85_RS09460 (NWT85_09460) | 1931827..1933887 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| NWT85_RS09465 (NWT85_09465) | 1933891..1934550 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NWT85_RS09470 (NWT85_09470) | 1934629..1934859 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NWT85_RS09475 (NWT85_09475) | 1934972..1935346 | + | 375 | WP_023285314.1 | CopC domain-containing protein YobA | - |
| NWT85_RS09480 (NWT85_09480) | 1935350..1936219 | + | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| NWT85_RS09485 (NWT85_09485) | 1936236..1936574 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1936697..1936842 | - | 146 | - | - | Antitoxin |
| - | 1936733..1936835 | + | 103 | - | - | Toxin |
| NWT85_RS09490 (NWT85_09490) | 1937210..1937353 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NWT85_RS09495 (NWT85_09495) | 1937458..1938426 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NWT85_RS09500 (NWT85_09500) | 1938583..1939236 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| NWT85_RS09505 (NWT85_09505) | 1939233..1939424 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NWT85_RS09510 (NWT85_09510) | 1939522..1939761 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NWT85_RS09515 (NWT85_09515) | 1939877..1941310 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T254332 NZ_CP102869:1936733-1936835 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT254332 NZ_CP102869:c1936842-1936697 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
