254285

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Fic(toxin)
Location 2952627..2953213 Replicon chromosome
Accession NZ_CP102850
Organism Gordonia mangrovi strain HNM0687

Toxin (Protein)


Gene name doc Uniprot ID -
Locus tag NWF22_RS13320 Protein ID WP_160902132.1
Coordinates 2952627..2953019 (-) Length 131 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID -
Locus tag NWF22_RS13325 Protein ID WP_160902221.1
Coordinates 2953016..2953213 (-) Length 66 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NWF22_RS13305 (NWF22_13305) 2950200..2951468 - 1269 WP_160902131.1 DUF222 domain-containing protein -
NWF22_RS13310 (NWF22_13310) 2951851..2952057 + 207 WP_202398480.1 hypothetical protein -
NWF22_RS13315 (NWF22_13315) 2952118..2952438 + 321 WP_202398481.1 hypothetical protein -
NWF22_RS13320 (NWF22_13320) 2952627..2953019 - 393 WP_160902132.1 Fic family protein Toxin
NWF22_RS13325 (NWF22_13325) 2953016..2953213 - 198 WP_160902221.1 antitoxin Phd Antitoxin
NWF22_RS13330 (NWF22_13330) 2953324..2953446 - 123 WP_258321452.1 hypothetical protein -
NWF22_RS13335 (NWF22_13335) 2953592..2954068 - 477 Protein_2637 NAD(P)/FAD-dependent oxidoreductase -
NWF22_RS13340 (NWF22_13340) 2954174..2954536 - 363 WP_160902133.1 metalloregulator ArsR/SmtB family transcription factor -
NWF22_RS13345 (NWF22_13345) 2954662..2955441 + 780 Protein_2639 heavy metal translocating P-type ATPase -
NWF22_RS13350 (NWF22_13350) 2955722..2956951 + 1230 WP_258321136.1 IS110 family transposase -
NWF22_RS13355 (NWF22_13355) 2956976..2958097 + 1122 WP_160904012.1 cadmium family heavy metal-translocating P-type ATPase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Fido domain

(22-82)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 131 a.a.        Molecular weight: 14226.07 Da        Isoelectric Point: 4.5728

>T254285 WP_160902132.1 NZ_CP102850:c2953019-2952627 [Gordonia mangrovi]
VIYLDRHDVITAGSVACGEQVHVRDEGLLQAAVARPQVSVFGLDAYPEPWDKAAALLHSLARNHPLVDGNKRTAWASAVV
FLDINDIVPEADLDVDRAEKFVLDVAQGRMDNWPEISITLHDLFVSAKGT

Download         Length: 393 bp

Antitoxin


Download         Length: 66 a.a.        Molecular weight: 7237.04 Da        Isoelectric Point: 6.7253

>AT254285 WP_160902221.1 NZ_CP102850:c2953213-2953016 [Gordonia mangrovi]
VPSLNIEFTDEEHAGIKAAAEREGVSLKPFVHDAAVERASDHRRRVLDAARRSAAWSAELNDRLK

Download         Length: 198 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References