Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1929437..1929582 | Replicon | chromosome |
| Accession | NZ_CP102841 | ||
| Organism | Klebsiella pneumoniae strain KP4863 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1929473..1929575 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1929437..1929582 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NV397_RS09175 (NV397_09175) | 1924567..1926627 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NV397_RS09180 (NV397_09180) | 1926631..1927290 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NV397_RS09185 (NV397_09185) | 1927369..1927599 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NV397_RS09190 (NV397_09190) | 1927712..1928086 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NV397_RS09195 (NV397_09195) | 1928090..1928959 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NV397_RS09200 (NV397_09200) | 1928976..1929314 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1929437..1929582 | - | 146 | - | - | Antitoxin |
| - | 1929473..1929575 | + | 103 | - | - | Toxin |
| NV397_RS09205 (NV397_09205) | 1929950..1930093 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NV397_RS09210 (NV397_09210) | 1930198..1931166 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| NV397_RS09215 (NV397_09215) | 1931323..1931976 | + | 654 | WP_163621953.1 | protein-serine/threonine phosphatase | - |
| NV397_RS09220 (NV397_09220) | 1931973..1932164 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NV397_RS09225 (NV397_09225) | 1932262..1932501 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NV397_RS09230 (NV397_09230) | 1932617..1934050 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T254265 NZ_CP102841:1929473-1929575 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT254265 NZ_CP102841:c1929582-1929437 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
