Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hipBA/HipA-HipB
Location 2709256..2710844 Replicon chromosome
Accession NZ_CP102836
Organism Klebsiella pneumoniae strain KP0079

Toxin (Protein)


Gene name hipA Uniprot ID A0A0H3GN97
Locus tag NV396_RS13380 Protein ID WP_004199851.1
Coordinates 2709256..2710578 (-) Length 441 a.a.

Antitoxin (Protein)


Gene name hipB Uniprot ID A0A0H3GXD8
Locus tag NV396_RS13385 Protein ID WP_002904790.1
Coordinates 2710578..2710844 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NV396_RS13365 (NV396_13365) 2704321..2706822 + 2502 WP_004199853.1 fimbria/pilus outer membrane usher protein -
NV396_RS13370 (NV396_13370) 2706810..2707814 + 1005 WP_004199852.1 fimbrial protein -
NV396_RS13375 (NV396_13375) 2707947..2709239 + 1293 WP_002904794.1 glycoside hydrolase family 10 protein -
NV396_RS13380 (NV396_13380) 2709256..2710578 - 1323 WP_004199851.1 type II toxin-antitoxin system HipA family toxin Toxin
NV396_RS13385 (NV396_13385) 2710578..2710844 - 267 WP_002904790.1 type II toxin-antitoxin system antitoxin HipB Antitoxin
NV396_RS13390 (NV396_13390) 2711110..2711436 - 327 WP_002904788.1 hydroxyisourate hydrolase -
NV396_RS13395 (NV396_13395) 2711433..2711933 - 501 WP_002904787.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase -
NV396_RS13400 (NV396_13400) 2711911..2713290 - 1380 WP_004199850.1 nucleobase:cation symporter-2 family protein -
NV396_RS13405 (NV396_13405) 2713636..2714790 + 1155 WP_002904783.1 FAD-dependent urate hydroxylase HpxO -
NV396_RS13410 (NV396_13410) 2714771..2715694 - 924 WP_004199849.1 LysR family hpxDE operon transcriptional regulator HpxR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HipA-like, C-terminal

(149-402)

Antitoxin

Cro/C1-type helix-turn-helix domain

(16-65)


Sequences

Toxin        


Download         Length: 441 a.a.        Molecular weight: 49128.44 Da        Isoelectric Point: 7.2487

>T254244 WP_004199851.1 NZ_CP102836:c2710578-2709256 [Klebsiella pneumoniae]
MATLTTWMNNVRVGTLTRQANGAHSFRYDEEWLRSPRARPLSLSLPLQYGNITADAVYHYFDNLLPDSPQVRDRIVRRYQ
ARSKQPFDLLAEVGRDSVGAVTLLPPGEEAHLEGLRWQTLDEAQLTALLTAYQSDIPLGMITSQDDFRISVAGAQEKTAL
LRMGEQWCIPQGATPTTHIIKLPIGEIKQPNATLDLRESVDNEYLCLALARELGLAVPEAEIITTPRIRALAVTRFDRRW
AQEGRVLLRLPQEDLCQAFGLPSAMKYESDGGPGIAAIMTFLLGSSEALKDRYDFMKFMVFQWLTGATDGHAKNFSIYLL
PGGSYRLTPFYDIISAFPVLGGTGLHLRDLKLSMGLNATKGRKTEINAIYPRHFLATAKAVNFPLEQMLAILQEFAGHVP
QAIESARRTLPADFSSHVWQAITENMLKLHARLQQGLQAL

Download         Length: 1323 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9906.27 Da        Isoelectric Point: 8.5912

>AT254244 WP_002904790.1 NZ_CP102836:c2710844-2710578 [Klebsiella pneumoniae]
MNSPQIYSPVQLANYLKLLRQQNHWTQDALARRIGIKQATLSNFENHPDKTTLTTLFKILQSLGVVMTLNAKAAETAPAP
DNNTDLDW

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GN97

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GXD8

References