Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1980179..1980324 | Replicon | chromosome |
| Accession | NZ_CP102836 | ||
| Organism | Klebsiella pneumoniae strain KP0079 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1980215..1980317 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1980179..1980324 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NV396_RS09645 (NV396_09645) | 1975309..1977369 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NV396_RS09650 (NV396_09650) | 1977373..1978032 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NV396_RS09655 (NV396_09655) | 1978111..1978341 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NV396_RS09660 (NV396_09660) | 1978454..1978828 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NV396_RS09665 (NV396_09665) | 1978832..1979701 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| NV396_RS09670 (NV396_09670) | 1979718..1980056 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1980179..1980324 | - | 146 | - | - | Antitoxin |
| - | 1980215..1980317 | + | 103 | - | - | Toxin |
| NV396_RS09675 (NV396_09675) | 1980692..1980835 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NV396_RS09680 (NV396_09680) | 1980940..1981908 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NV396_RS09685 (NV396_09685) | 1982065..1982718 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NV396_RS09690 (NV396_09690) | 1982715..1982906 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NV396_RS09695 (NV396_09695) | 1983004..1983243 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NV396_RS09700 (NV396_09700) | 1983359..1984792 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T254240 NZ_CP102836:1980215-1980317 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT254240 NZ_CP102836:c1980324-1980179 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
