Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbE-relB/ParE-YafN
Location 5734872..5735391 Replicon chromosome
Accession NZ_CP102780
Organism Pandoraea commovens strain LB-19-202-79

Toxin (Protein)


Gene name stbE Uniprot ID -
Locus tag NTU39_RS25830 Protein ID WP_257958858.1
Coordinates 5735101..5735391 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NTU39_RS25825 Protein ID WP_150663612.1
Coordinates 5734872..5735114 (+) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NTU39_RS25795 (NTU39_25795) 5729874..5731187 - 1314 WP_257958857.1 NAD(P)/FAD-dependent oxidoreductase -
NTU39_RS25800 (NTU39_25800) 5731199..5731684 - 486 WP_150663609.1 hypothetical protein -
NTU39_RS25805 (NTU39_25805) 5731711..5732508 - 798 WP_150663610.1 BON domain-containing protein -
NTU39_RS25810 (NTU39_25810) 5732629..5733216 - 588 WP_039393910.1 phosphoheptose isomerase -
NTU39_RS25815 (NTU39_25815) 5733348..5733701 - 354 WP_150664165.1 YraN family protein -
NTU39_RS25820 (NTU39_25820) 5733806..5734690 + 885 WP_150663611.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
NTU39_RS25825 (NTU39_25825) 5734872..5735114 + 243 WP_150663612.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
NTU39_RS25830 (NTU39_25830) 5735101..5735391 + 291 WP_257958858.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(9-68)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11100.01 Da        Isoelectric Point: 10.8976

>T254189 WP_257958858.1 NZ_CP102780:5735101-5735391 [Pandoraea commovens]
MTTYDLQFLPSALKEWQALDASIQRQFKTKLRRRLQQPQVPGSRLKAMPDCYKIKLASAGYRLIYRVNESAITVLVVAVG
KRENLKVYRNASERLT

Download         Length: 291 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8517.72 Da        Isoelectric Point: 4.4295

>AT254189 WP_150663612.1 NZ_CP102780:5734872-5735114 [Pandoraea commovens]
MKIILASASIGISELKSNPSAAINRANGPVAILNRNTPVAYLIPAADWETICERLDDADLADIIRSRAGETPVSTKLDDL

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References