Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1989522..1989793 | Replicon | chromosome |
| Accession | NZ_CP102694 | ||
| Organism | Escherichia coli strain GN4554 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1989652..1989755 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1989522..1989793 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NV952_RS09655 | 1986077..1986739 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NV952_RS09660 | 1986763..1987419 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NV952_RS09665 | 1987521..1987751 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NV952_RS09670 | 1987890..1988264 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NV952_RS09675 | 1988268..1989140 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| NV952_RS09680 | 1989153..1989494 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1989522..1989793 | - | 272 | - | - | Antitoxin |
| - | 1989652..1989755 | + | 104 | - | - | Toxin |
| NV952_RS09685 | 1989890..1990546 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| NV952_RS09690 | 1990547..1990738 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NV952_RS09695 | 1990843..1991079 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NV952_RS09700 | 1991197..1992636 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T254040 NZ_CP102694:1989652-1989755 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT254040 NZ_CP102694:c1989793-1989522 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
