Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1890248..1890393 | Replicon | chromosome |
| Accession | NZ_CP102692 | ||
| Organism | Klebsiella pneumoniae strain GN4542 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1890284..1890386 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1890248..1890393 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NV951_RS09180 (NV951_09180) | 1885378..1887438 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NV951_RS09185 (NV951_09185) | 1887442..1888101 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NV951_RS09190 (NV951_09190) | 1888180..1888410 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NV951_RS09195 (NV951_09195) | 1888523..1888897 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NV951_RS09200 (NV951_09200) | 1888901..1889770 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NV951_RS09205 (NV951_09205) | 1889787..1890125 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1890248..1890393 | - | 146 | - | - | Antitoxin |
| - | 1890284..1890386 | + | 103 | - | - | Toxin |
| NV951_RS09210 (NV951_09210) | 1890762..1890905 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| NV951_RS09215 (NV951_09215) | 1891010..1891978 | - | 969 | WP_074182211.1 | VirK/YbjX family protein | - |
| NV951_RS09220 (NV951_09220) | 1892135..1892788 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| NV951_RS09225 (NV951_09225) | 1892785..1892976 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NV951_RS09230 (NV951_09230) | 1893074..1893313 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NV951_RS09235 (NV951_09235) | 1893429..1894862 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T254019 NZ_CP102692:1890284-1890386 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT254019 NZ_CP102692:c1890393-1890248 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
