Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-parD/RHH(antitoxin)
Location 940516..941062 Replicon chromosome
Accession NZ_CP102665
Organism Sphingobium sp. JS3065

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NUH86_RS21660 Protein ID WP_267252543.1
Coordinates 940516..940809 (-) Length 98 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag NUH86_RS21665 Protein ID WP_267252544.1
Coordinates 940802..941062 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NUH86_RS21650 (NUH86_21655) 937184..937606 - 423 WP_267252541.1 Imm63 family immunity protein -
NUH86_RS21655 (NUH86_21660) 937939..939978 - 2040 WP_267252542.1 TonB-dependent receptor -
NUH86_RS21660 (NUH86_21665) 940516..940809 - 294 WP_267252543.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NUH86_RS21665 (NUH86_21670) 940802..941062 - 261 WP_267252544.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
NUH86_RS21670 (NUH86_21675) 941278..941808 + 531 WP_267252545.1 GNAT family N-acetyltransferase -
NUH86_RS21675 (NUH86_21680) 941850..942446 - 597 WP_267252546.1 alpha/beta hydrolase -
NUH86_RS21680 (NUH86_21685) 943131..943961 + 831 WP_267252547.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
NUH86_RS21685 (NUH86_21690) 944134..944454 + 321 WP_084438946.1 hypothetical protein -
NUH86_RS21690 (NUH86_21695) 944658..945146 + 489 WP_267252548.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-92)

Antitoxin

Antitoxin ParD

(1-80)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11034.58 Da        Isoelectric Point: 4.2184

>T253905 WP_267252543.1 NZ_CP102665:c940809-940516 [Sphingobium sp. JS3065]
MAEIIISQQADDDFERIWLNIALDNDDAADRLLRAINVKIERLRIFPEIGRARDDLSPGARGLVHGSYLILYEYDAARDV
VTIVTVVEGMRDLDCLF

Download         Length: 294 bp

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9256.52 Da        Isoelectric Point: 7.0146

>AT253905 WP_267252544.1 NZ_CP102665:c941062-940802 [Sphingobium sp. JS3065]
MTVVVPDQMAAKIHAAVEAGEYASASEVVRDAMRLWSERREFRQDELLALREAWDRGKASGVAGPLDMEAIISRAKGKKA
AASGNG

Download         Length: 261 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References