Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 889159..889696 Replicon chromosome
Accession NZ_CP102664
Organism Sphingobium sp. JS3065

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag NUH86_RS04345 Protein ID WP_013846902.1
Coordinates 889159..889455 (-) Length 99 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag NUH86_RS04350 Protein ID WP_013846901.1
Coordinates 889445..889696 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NUH86_RS04345 (NUH86_04345) 889159..889455 - 297 WP_013846902.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NUH86_RS04350 (NUH86_04350) 889445..889696 - 252 WP_013846901.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
NUH86_RS04355 (NUH86_04355) 889923..890399 + 477 WP_013846900.1 hypothetical protein -
NUH86_RS04360 (NUH86_04360) 890396..890701 + 306 WP_013846899.1 hypothetical protein -
NUH86_RS04365 (NUH86_04365) 890889..892136 + 1248 WP_013846898.1 hypothetical protein -
NUH86_RS04370 (NUH86_04370) 892303..893112 + 810 WP_013846897.1 type I restriction-modification system subunit M -
NUH86_RS04375 (NUH86_04375) 893254..893949 + 696 WP_013846896.1 hypothetical protein -
NUH86_RS04380 (NUH86_04380) 894025..894672 + 648 WP_013846895.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-91)

Antitoxin

Antitoxin ParD

(6-75)


Sequences

Toxin        


Download         Length: 99 a.a.        Molecular weight: 10941.43 Da        Isoelectric Point: 6.8785

>T253900 WP_013846902.1 NZ_CP102664:c889455-889159 [Sphingobium sp. JS3065]
MAYRLTRNAEKDLIGIYVGGVGELGEAVAEKYQAGLHRVFGFLSDFPYSARARAEISPPVRAHPYKSHIVVYIIEGQDIL
ILGVRHGREDWQASDQLS

Download         Length: 297 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9230.40 Da        Isoelectric Point: 5.8295

>AT253900 WP_013846901.1 NZ_CP102664:c889696-889445 [Sphingobium sp. JS3065]
MATMNVSLPDAMKEWVEGQAGTGRYSNASDYVRDLIRRDQERREKIAAMQTMVDESLASGISPNSIDDMMKEARRRAGVG
HGL

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References