253886

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /RES-TIGR02293
Location 369401..370302 Replicon chromosome
Accession NZ_CP102604
Organism Pantoea sp. SOD02

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag NR302_RS01645 Protein ID WP_256698156.1
Coordinates 369401..369862 (-) Length 154 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag NR302_RS01650 Protein ID WP_258144370.1
Coordinates 369859..370302 (-) Length 148 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NR302_RS01630 (NR302_01630) 364448..365512 - 1065 WP_061718370.1 NAD(P)-dependent alcohol dehydrogenase -
NR302_RS01635 (NR302_01635) 365723..368551 - 2829 WP_008109963.1 excinuclease ABC subunit UvrA -
NR302_RS01640 (NR302_01640) 368774..369328 + 555 WP_008109965.1 single-stranded DNA-binding protein SSB1 -
NR302_RS01645 (NR302_01645) 369401..369862 - 462 WP_256698156.1 RES domain-containing protein Toxin
NR302_RS01650 (NR302_01650) 369859..370302 - 444 WP_258144370.1 DUF2384 domain-containing protein Antitoxin
NR302_RS01655 (NR302_01655) 370375..370902 - 528 WP_258144371.1 isochorismatase family protein -
NR302_RS01660 (NR302_01660) 371026..371856 + 831 WP_258144373.1 AraC family transcriptional regulator -
NR302_RS01665 (NR302_01665) 371929..372882 + 954 WP_258144374.1 DMT family transporter -
NR302_RS01670 (NR302_01670) 373815..374210 - 396 WP_008109970.1 IS3 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(3-148)

Antitoxin

Antitoxin Xre/MbcA/ParS-like, toxin-binding domain

(93-144)


Sequences

Toxin        


Download         Length: 154 a.a.        Molecular weight: 17115.36 Da        Isoelectric Point: 4.6017

>T253886 WP_256698156.1 NZ_CP102604:c369862-369401 [Pantoea sp. SOD02]
VIFYRLTKTLYASEAWTGNGAKQYGGRWNHKGHPTIYVATSVSLAALEVLVHVSNESILDEYTLFSIEIPDDEVSYISED
FLPADWRQDPAPVSTMDLGTGWLQSREGAALIIPSSIIPMENNAILNPEHPVFESYLSSVNKLPFAFDKRLIK

Download         Length: 462 bp

Antitoxin


Download         Length: 148 a.a.        Molecular weight: 16127.57 Da        Isoelectric Point: 9.8549

>AT253886 WP_258144370.1 NZ_CP102604:c370302-369859 [Pantoea sp. SOD02]
MRAYIPDGKSHDNALWRFAGLPPRGLELTRMLEAGLPVAVIDDIRHWSAMSRAEIMKVTGINERNIARRKSAGKSLSPDE
SERIARFVRVIDAAVQLFGGNKEDATQWLSRPVKGLGNIAPITLLATESGALDVLDLIGRLEHGVFS

Download         Length: 444 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References