Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | pmenTA/darT(toxin) |
| Location | 4526700..4528432 | Replicon | chromosome |
| Accession | NZ_CP102593 | ||
| Organism | Xanthomonas campestris pv. phormiicola strain CFBP 8444 | ||
Toxin (Protein)
| Gene name | pmenT | Uniprot ID | - |
| Locus tag | NRY95_RS19060 | Protein ID | WP_228321732.1 |
| Coordinates | 4526700..4527356 (+) | Length | 219 a.a. |
Antitoxin (Protein)
| Gene name | pmenA | Uniprot ID | - |
| Locus tag | NRY95_RS19065 | Protein ID | WP_228321733.1 |
| Coordinates | 4527353..4528432 (+) | Length | 360 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NRY95_RS19035 (NRY95_19040) | 4522443..4523153 | - | 711 | WP_228321727.1 | DUF4172 domain-containing protein | - |
| NRY95_RS19040 (NRY95_19045) | 4523403..4523969 | - | 567 | WP_228321728.1 | SymE family type I addiction module toxin | - |
| NRY95_RS19045 (NRY95_19050) | 4524059..4525282 | - | 1224 | WP_228321729.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NRY95_RS19050 (NRY95_19055) | 4525279..4525950 | - | 672 | WP_228321730.1 | hypothetical protein | - |
| NRY95_RS19055 (NRY95_19060) | 4526164..4526403 | - | 240 | WP_228321731.1 | hypothetical protein | - |
| NRY95_RS19060 (NRY95_19065) | 4526700..4527356 | + | 657 | WP_228321732.1 | DUF4433 domain-containing protein | Toxin |
| NRY95_RS19065 (NRY95_19070) | 4527353..4528432 | + | 1080 | WP_228321733.1 | macro domain-containing protein | Antitoxin |
| NRY95_RS19075 (NRY95_19080) | 4529255..4531441 | - | 2187 | WP_228321734.1 | 1,4-alpha-glucan branching protein GlgB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 4508204..4528432 | 20228 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 219 a.a. Molecular weight: 24987.56 Da Isoelectric Point: 9.1945
>T253876 WP_228321732.1 NZ_CP102593:4526700-4527356 [Xanthomonas campestris pv. phormiicola]
MAYDYKRLINPERALIFRILHRDNLTWALDNGLHCGNSSVLAPGWVSIGNPDLITKRSSHPVSIAPGGFLNDYVPFYFTP
FSPMLRNISTGWGGVPRRPNEEIVILASSLLRVAADGLRWAFTDMHAYYRWATYYNDLGSLSKIDWPLLQRRDFKRDPDD
PAKFERYQAEALVHRHMPLSSLTGIACYTAQMQQVIEQQVHSRGLNFPVKALPSWYFS
MAYDYKRLINPERALIFRILHRDNLTWALDNGLHCGNSSVLAPGWVSIGNPDLITKRSSHPVSIAPGGFLNDYVPFYFTP
FSPMLRNISTGWGGVPRRPNEEIVILASSLLRVAADGLRWAFTDMHAYYRWATYYNDLGSLSKIDWPLLQRRDFKRDPDD
PAKFERYQAEALVHRHMPLSSLTGIACYTAQMQQVIEQQVHSRGLNFPVKALPSWYFS
Download Length: 657 bp
Antitoxin
Download Length: 360 a.a. Molecular weight: 40496.77 Da Isoelectric Point: 6.7016
>AT253876 WP_228321733.1 NZ_CP102593:4527353-4528432 [Xanthomonas campestris pv. phormiicola]
MIKFTQGNLLEVPAEALVNTVNTVGVMGKGIALMFKERFPENFRRYAAACKAGDVHVGKMFVTEVSELDGPRWVVNFPTK
QHWRAASRLEWITEGLQELRHFLIENKVKSVAIPPLGAGNGGLEWALVRPQIEAALGDLSLDVLVFEPTSKYQNVAKRAG
VEKLTPTRALIAELVRRYWVLGMDCSLLEIQKLAWFLERAVGRLMPGKDLELHFVAHKYGPYANRLDHLLNNLDGSYLHC
DKRISDADPFDVIWFDESRKDFLQAYLRSEAKSYVPALEATAQLIDGFESPFGMELLASVDWLLFKEGVEPTVPAVRAGL
KNWQEGSGAAERKNRLFDDQALSFALERLQLKKEMHALM
MIKFTQGNLLEVPAEALVNTVNTVGVMGKGIALMFKERFPENFRRYAAACKAGDVHVGKMFVTEVSELDGPRWVVNFPTK
QHWRAASRLEWITEGLQELRHFLIENKVKSVAIPPLGAGNGGLEWALVRPQIEAALGDLSLDVLVFEPTSKYQNVAKRAG
VEKLTPTRALIAELVRRYWVLGMDCSLLEIQKLAWFLERAVGRLMPGKDLELHFVAHKYGPYANRLDHLLNNLDGSYLHC
DKRISDADPFDVIWFDESRKDFLQAYLRSEAKSYVPALEATAQLIDGFESPFGMELLASVDWLLFKEGVEPTVPAVRAGL
KNWQEGSGAAERKNRLFDDQALSFALERLQLKKEMHALM
Download Length: 1080 bp
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|