Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1966077..1966222 | Replicon | chromosome |
| Accession | NZ_CP102552 | ||
| Organism | Klebsiella pneumoniae strain KPH3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1966113..1966215 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1966077..1966222 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NUG48_RS09705 (NUG48_09705) | 1961207..1963267 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NUG48_RS09710 (NUG48_09710) | 1963271..1963930 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NUG48_RS09715 (NUG48_09715) | 1964009..1964239 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NUG48_RS09720 (NUG48_09720) | 1964352..1964726 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| NUG48_RS09725 (NUG48_09725) | 1964730..1965599 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| NUG48_RS09730 (NUG48_09730) | 1965616..1965954 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1966077..1966222 | - | 146 | - | - | Antitoxin |
| - | 1966113..1966215 | + | 103 | - | - | Toxin |
| NUG48_RS09735 (NUG48_09735) | 1966591..1966734 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| NUG48_RS09740 (NUG48_09740) | 1966839..1967807 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| NUG48_RS09745 (NUG48_09745) | 1967964..1968617 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| NUG48_RS09750 (NUG48_09750) | 1968614..1968805 | - | 192 | WP_257874023.1 | YebW family protein | - |
| NUG48_RS09755 (NUG48_09755) | 1968903..1969142 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NUG48_RS09760 (NUG48_09760) | 1969258..1970691 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T253854 NZ_CP102552:1966113-1966215 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT253854 NZ_CP102552:c1966222-1966077 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
