Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 218981..219126 | Replicon | chromosome |
| Accession | NZ_CP102546 | ||
| Organism | Klebsiella pneumoniae strain KPH1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 219017..219119 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 218981..219126 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NUG47_RS01020 | 214111..216171 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NUG47_RS01025 | 216175..216834 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NUG47_RS01030 | 216913..217143 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NUG47_RS01035 | 217256..217630 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NUG47_RS01040 | 217634..218503 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| NUG47_RS01045 | 218520..218858 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 218981..219126 | - | 146 | - | - | Antitoxin |
| - | 219017..219119 | + | 103 | - | - | Toxin |
| NUG47_RS01050 | 219495..219638 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NUG47_RS01055 | 219743..220711 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NUG47_RS01060 | 220868..221521 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| NUG47_RS01065 | 221518..221709 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NUG47_RS01070 | 221807..222046 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NUG47_RS01075 | 222162..223595 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T253829 NZ_CP102546:219017-219119 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT253829 NZ_CP102546:c219126-218981 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
