Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4840906..4841052 | Replicon | chromosome |
| Accession | NC_015663 | ||
| Organism | Enterobacter aerogenes KCTC 2190 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4840914..4841017 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4840906..4841052 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EAE_RS22930 | 4836208..4836726 | + | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
| EAE_RS22935 | 4836744..4837493 | + | 750 | WP_015366013.1 | molecular chaperone | - |
| EAE_RS22940 | 4837496..4839820 | + | 2325 | WP_015705944.1 | fimbrial biogenesis outer membrane usher protein | - |
| EAE_RS22945 | 4839839..4840786 | + | 948 | WP_032709999.1 | spore coat U domain-containing protein | - |
| - | 4840906..4841052 | + | 147 | - | - | Antitoxin |
| - | 4840914..4841017 | - | 104 | - | - | Toxin |
| EAE_RS22950 | 4841174..4841515 | - | 342 | WP_015705946.1 | YebY family protein | - |
| EAE_RS22955 | 4841529..4842398 | - | 870 | WP_015705947.1 | copper homeostasis membrane protein CopD | - |
| EAE_RS22960 | 4842402..4842776 | - | 375 | WP_026612268.1 | CopC domain-containing protein YobA | - |
| EAE_RS22965 | 4842911..4843141 | + | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| EAE_RS22970 | 4843221..4843880 | + | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| EAE_RS22975 | 4843883..4845943 | - | 2061 | WP_015705949.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T25379 NC_015663:c4841017-4840914 [Klebsiella aerogenes KCTC 2190]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT25379 NC_015663:4840906-4841052 [Klebsiella aerogenes KCTC 2190]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
