Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2117978..2118188 | Replicon | chromosome |
| Accession | NZ_CP102500 | ||
| Organism | Citrobacter youngae strain CF10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2118080..2118183 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2117978..2118188 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NUG39_RS10205 | 2114494..2115156 | - | 663 | WP_257749181.1 | exodeoxyribonuclease X | - |
| NUG39_RS10210 | 2115179..2115835 | - | 657 | WP_115643274.1 | carbon-nitrogen hydrolase family protein | - |
| NUG39_RS10215 | 2115942..2116172 | - | 231 | WP_005120732.1 | DNA polymerase III subunit theta | - |
| NUG39_RS10220 | 2116315..2116689 | + | 375 | WP_115643275.1 | CopC domain-containing protein YobA | - |
| NUG39_RS10225 | 2116693..2117565 | + | 873 | WP_137363912.1 | copper homeostasis membrane protein CopD | - |
| NUG39_RS10230 | 2117586..2117924 | + | 339 | WP_061068068.1 | YebY family protein | - |
| - | 2117978..2118188 | - | 211 | - | - | Antitoxin |
| - | 2118080..2118183 | + | 104 | - | - | Toxin |
| NUG39_RS10235 | 2118548..2119330 | + | 783 | WP_048211385.1 | HNH endonuclease signature motif containing protein | - |
| NUG39_RS10240 | 2119576..2120217 | + | 642 | WP_061068066.1 | protein-serine/threonine phosphatase | - |
| NUG39_RS10245 | 2120218..2120409 | - | 192 | WP_048211387.1 | YebW family protein | - |
| NUG39_RS10250 | 2120482..2121399 | - | 918 | WP_121584746.1 | LysR substrate-binding domain-containing protein | - |
| NUG39_RS10255 | 2121580..2122707 | + | 1128 | WP_257749183.1 | MFS transporter | - |
| NUG39_RS10260 | 2122735..2122971 | - | 237 | WP_101742234.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2112413..2124493 | 12080 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T253781 NZ_CP102500:2118080-2118183 [Citrobacter youngae]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 211 bp
>AT253781 NZ_CP102500:c2118188-2117978 [Citrobacter youngae]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGT
CTGAAAAAAAGGGAGATTGTCACTCGCTACAATGTAAAAACCGCAAGTTCT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGT
CTGAAAAAAAGGGAGATTGTCACTCGCTACAATGTAAAAACCGCAAGTTCT
