Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 714139..714410 | Replicon | chromosome |
| Accession | NZ_CP102488 | ||
| Organism | Escherichia coli O15:H18 strain ST69 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 714269..714372 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 714139..714410 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NUI00_RS03255 | 710694..711356 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NUI00_RS03260 | 711380..712036 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NUI00_RS03265 | 712138..712368 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NUI00_RS03270 | 712507..712881 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| NUI00_RS03275 | 712885..713757 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| NUI00_RS03280 | 713770..714111 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 714139..714410 | - | 272 | - | - | Antitoxin |
| - | 714269..714372 | + | 104 | - | - | Toxin |
| NUI00_RS03285 | 714507..715163 | + | 657 | WP_001546849.1 | protein-serine/threonine phosphatase | - |
| NUI00_RS03290 | 715164..715355 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NUI00_RS03295 | 715460..715696 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NUI00_RS03300 | 715814..717253 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 706829..717259 | 10430 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T253737 NZ_CP102488:714269-714372 [Escherichia coli O15:H18]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT253737 NZ_CP102488:c714410-714139 [Escherichia coli O15:H18]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
