Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2820694..2820839 | Replicon | chromosome |
| Accession | NZ_CP102435 | ||
| Organism | Klebsiella pneumoniae strain K194 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2820701..2820803 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2820694..2820839 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NR799_RS13955 (NR799_13955) | 2816226..2817659 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NR799_RS13960 (NR799_13960) | 2817775..2818014 | + | 240 | WP_002911393.1 | YebV family protein | - |
| NR799_RS13965 (NR799_13965) | 2818112..2818303 | + | 192 | WP_002911395.1 | YebW family protein | - |
| NR799_RS13970 (NR799_13970) | 2818300..2818953 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NR799_RS13975 (NR799_13975) | 2819110..2820078 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NR799_RS13980 (NR799_13980) | 2820183..2820326 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2820694..2820839 | + | 146 | - | - | Antitoxin |
| - | 2820701..2820803 | - | 103 | - | - | Toxin |
| NR799_RS13985 (NR799_13985) | 2820962..2821300 | - | 339 | WP_002911404.1 | YebY family protein | - |
| NR799_RS13990 (NR799_13990) | 2821317..2822186 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| NR799_RS13995 (NR799_13995) | 2822190..2822564 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NR799_RS14000 (NR799_14000) | 2822677..2822907 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NR799_RS14005 (NR799_14005) | 2822986..2823645 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NR799_RS14010 (NR799_14010) | 2823649..2825709 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T253634 NZ_CP102435:c2820803-2820701 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT253634 NZ_CP102435:2820694-2820839 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
