Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 4363220..4363717 Replicon chromosome
Accession NZ_CP102378
Organism Escherichia coli strain JB41

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag NR351_RS21170 Protein ID WP_001173343.1
Coordinates 4363544..4363717 (+) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag NR351_RS21165 Protein ID WP_000398619.1
Coordinates 4363220..4363516 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NR351_RS21145 (4359951) 4359951..4360670 - 720 WP_000611288.1 two-component system response regulator DcuR -
NR351_RS21150 (4360667) 4360667..4362298 - 1632 WP_001216477.1 sensor histidine kinase -
NR351_RS21155 (4362479) 4362479..4362709 + 231 WP_000371704.1 4Fe-4S mono-cluster protein YjdI -
NR351_RS21160 (4362721) 4362721..4362993 + 273 WP_000405651.1 GNAT family N-acetyltransferase -
NR351_RS21165 (4363220) 4363220..4363516 + 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
NR351_RS21170 (4363544) 4363544..4363717 + 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
NR351_RS21175 (4363836) 4363836..4365353 - 1518 WP_001295074.1 lysine--tRNA ligase -
NR351_RS21180 (4365590) 4365590..4367047 - 1458 WP_000856829.1 dipeptide/tripeptide permease DtpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T253521 WP_001173343.1 NZ_CP102378:4363544-4363717 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT253521 WP_000398619.1 NZ_CP102378:4363220-4363516 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References