Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2702080..2702545 Replicon chromosome
Accession NZ_CP102358
Organism Pseudomonas zeae strain BIM B-582

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NQ186_RS12045 Protein ID WP_150650815.1
Coordinates 2702080..2702349 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NQ186_RS12050 Protein ID WP_083368637.1
Coordinates 2702339..2702545 (-) Length 69 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NQ186_RS12015 (NQ186_12015) 2698045..2698518 + 474 WP_102902833.1 type II secretion system protein -
NQ186_RS12020 (NQ186_12020) 2698524..2698898 + 375 WP_095124774.1 type II secretion system protein -
NQ186_RS12025 (NQ186_12025) 2698873..2699412 + 540 WP_095124773.1 type II secretion system protein -
NQ186_RS12030 (NQ186_12030) 2699409..2699801 + 393 WP_095124772.1 curli production assembly/transport protein CsgE -
NQ186_RS12035 (NQ186_12035) 2699798..2700229 + 432 WP_095124771.1 curli assembly protein CsgF -
NQ186_RS12040 (NQ186_12040) 2700259..2701119 + 861 WP_257358147.1 CsgG/HfaB family protein -
NQ186_RS12045 (NQ186_12045) 2702080..2702349 - 270 WP_150650815.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NQ186_RS12050 (NQ186_12050) 2702339..2702545 - 207 WP_083368637.1 antitoxin Antitoxin
NQ186_RS12055 (NQ186_12055) 2702856..2704307 - 1452 WP_257358148.1 curlin -
NQ186_RS12060 (NQ186_12060) 2704335..2704799 - 465 WP_257358149.1 curlin -
NQ186_RS12065 (NQ186_12065) 2704873..2707101 - 2229 WP_257358150.1 Ig-like domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10205.80 Da        Isoelectric Point: 7.3988

>T253475 WP_150650815.1 NZ_CP102358:c2702349-2702080 [Pseudomonas zeae]
MQVEWQPEARAELLKILDYISDRNLVAADRLSQAIEGATVTLAQHPHLYRMGRAPGTREMVVHPNYLIIYQVVGRINILS
VLHARQEYP

Download         Length: 270 bp

Antitoxin


Download         Length: 69 a.a.        Molecular weight: 7609.72 Da        Isoelectric Point: 4.2985

>AT253475 WP_083368637.1 NZ_CP102358:c2702545-2702339 [Pseudomonas zeae]
MIDPSLIDPLCPVVSDLDPEEQAASYDRWLIAKVQASMSDTRPSIPNDQVMAEMRALMEAKRKKYDAG

Download         Length: 207 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References