253473

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/upstrm_HI1419-dnstrm_HI1420
Location 946498..947094 Replicon chromosome
Accession NZ_CP102358
Organism Pseudomonas zeae strain BIM B-582

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NQ186_RS04080 Protein ID WP_093430233.1
Coordinates 946792..947094 (-) Length 101 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NQ186_RS04075 Protein ID WP_093430232.1
Coordinates 946498..946788 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NQ186_RS04055 (NQ186_04055) 942800..944920 - 2121 WP_257356926.1 TonB-dependent copper receptor -
NQ186_RS04060 (NQ186_04060) 945006..945452 - 447 WP_257356927.1 DUF2946 domain-containing protein -
NQ186_RS04065 (NQ186_04065) 945474..945953 - 480 WP_093430230.1 copper chaperone PCu(A)C -
NQ186_RS04070 (NQ186_04070) 946002..946400 - 399 WP_122599673.1 DUF2946 domain-containing protein -
NQ186_RS04075 (NQ186_04075) 946498..946788 - 291 WP_093430232.1 putative addiction module antidote protein Antitoxin
NQ186_RS04080 (NQ186_04080) 946792..947094 - 303 WP_093430233.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NQ186_RS04085 (NQ186_04085) 947266..947982 - 717 WP_257356928.1 cobalt-precorrin-6A reductase -
NQ186_RS04090 (NQ186_04090) 947979..949076 - 1098 WP_099757880.1 cobalt-precorrin-5B (C(1))-methyltransferase -
NQ186_RS04095 (NQ186_04095) 949069..950280 - 1212 WP_257356929.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE -
NQ186_RS04100 (NQ186_04100) 950323..951708 + 1386 WP_093430237.1 precorrin-3B synthase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(1-96)

Antitoxin

Uncharacterized protein HI1420

(6-95)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11518.24 Da        Isoelectric Point: 9.7107

>T253473 WP_093430233.1 NZ_CP102358:c947094-946792 [Pseudomonas zeae]
MIAFERSRIFSEWLDSLKDIKGKGRIISRIKTAEHGNFGDCGFVGDTVYEMRVHYGPGYRMYFTRKGEVIYLLLIGGDKS
TQKRDIKRAVQMAHNIGNEE

Download         Length: 303 bp

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10473.93 Da        Isoelectric Point: 4.3525

>AT253473 WP_093430232.1 NZ_CP102358:c946788-946498 [Pseudomonas zeae]
MTEEFARFDAVEYLKTPEDMAAYLDACFDDDEGDGVLIRAALNDIARAQGMTQVARDAGLGRESLYKALSSTGNPEFATI
MKVMKALGLRLHAVTL

Download         Length: 291 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References