Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2150040..2150182 | Replicon | chromosome |
| Accession | NZ_CP102246 | ||
| Organism | Enterobacter cloacae complex sp. R_G8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2150075..2150178 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2150040..2150182 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQ842_RS10185 (NQ842_10185) | 2146524..2147186 | - | 663 | WP_013096100.1 | exodeoxyribonuclease X | - |
| NQ842_RS10190 (NQ842_10190) | 2147210..2147860 | - | 651 | WP_047360910.1 | carbon-nitrogen hydrolase family protein | - |
| NQ842_RS10195 (NQ842_10195) | 2147970..2148200 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| NQ842_RS10200 (NQ842_10200) | 2148338..2148709 | + | 372 | WP_182382049.1 | CopC domain-containing protein YobA | - |
| NQ842_RS10205 (NQ842_10205) | 2148711..2149580 | + | 870 | WP_063426239.1 | copper homeostasis membrane protein CopD | - |
| NQ842_RS10210 (NQ842_10210) | 2149597..2149935 | + | 339 | WP_014832387.1 | YebY family protein | - |
| - | 2150040..2150182 | - | 143 | - | - | Antitoxin |
| - | 2150075..2150178 | + | 104 | - | - | Toxin |
| NQ842_RS10215 (NQ842_10215) | 2150256..2150372 | - | 117 | Protein_1979 | integrase | - |
| NQ842_RS10220 (NQ842_10220) | 2150695..2151810 | - | 1116 | WP_176216289.1 | acyltransferase | - |
| NQ842_RS10225 (NQ842_10225) | 2152494..2153426 | - | 933 | WP_257256804.1 | VirK/YbjX family protein | - |
| NQ842_RS10230 (NQ842_10230) | 2153594..2154238 | + | 645 | WP_125364651.1 | protein-serine/threonine phosphatase | - |
| NQ842_RS10235 (NQ842_10235) | 2154272..2154511 | - | 240 | WP_046888041.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T253382 NZ_CP102246:2150075-2150178 [Enterobacter cloacae complex sp. R_G8]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT253382 NZ_CP102246:c2150182-2150040 [Enterobacter cloacae complex sp. R_G8]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
