Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2220362..2220630 | Replicon | chromosome |
| Accession | NZ_CP102244 | ||
| Organism | Escherichia coli O7:H15 strain ST70 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2220489..2220592 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2220362..2220630 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQZ80_RS10625 | 2216915..2217577 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NQZ80_RS10630 | 2217601..2218257 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NQZ80_RS10635 | 2218359..2218589 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NQZ80_RS10640 | 2218728..2219102 | + | 375 | WP_001578488.1 | CopC domain-containing protein YobA | - |
| NQZ80_RS10645 | 2219106..2219978 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| NQZ80_RS10650 | 2219991..2220332 | + | 342 | WP_000976485.1 | YebY family protein | - |
| - | 2220362..2220630 | - | 269 | - | - | Antitoxin |
| - | 2220489..2220592 | + | 104 | - | - | Toxin |
| NQZ80_RS10655 | 2220727..2221383 | + | 657 | WP_001559255.1 | protein-serine/threonine phosphatase | - |
| NQZ80_RS10660 | 2221384..2221575 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NQZ80_RS10665 | 2221680..2221916 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NQZ80_RS10670 | 2222034..2223473 | - | 1440 | WP_024186572.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2196576..2223479 | 26903 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T253359 NZ_CP102244:2220489-2220592 [Escherichia coli O7:H15]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT253359 NZ_CP102244:c2220630-2220362 [Escherichia coli O7:H15]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
