Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2010166..2010311 | Replicon | chromosome |
| Accession | NZ_CP102192 | ||
| Organism | Klebsiella pneumoniae strain S270v | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2010202..2010304 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2010166..2010311 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQZ65_RS09855 (NQZ65_09860) | 2005296..2007356 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NQZ65_RS09860 (NQZ65_09865) | 2007360..2008019 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NQZ65_RS09865 (NQZ65_09870) | 2008098..2008328 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NQZ65_RS09870 (NQZ65_09875) | 2008441..2008815 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NQZ65_RS09875 (NQZ65_09880) | 2008819..2009688 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| NQZ65_RS09880 (NQZ65_09885) | 2009705..2010043 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2010166..2010311 | - | 146 | - | - | Antitoxin |
| - | 2010202..2010304 | + | 103 | - | - | Toxin |
| NQZ65_RS09885 (NQZ65_09890) | 2010679..2010822 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NQZ65_RS09890 (NQZ65_09895) | 2010927..2011895 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NQZ65_RS09895 (NQZ65_09900) | 2012052..2012705 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NQZ65_RS09900 (NQZ65_09905) | 2012702..2012893 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NQZ65_RS09905 (NQZ65_09910) | 2012991..2013230 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NQZ65_RS09910 (NQZ65_09915) | 2013346..2014779 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T253328 NZ_CP102192:2010202-2010304 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT253328 NZ_CP102192:c2010311-2010166 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
