Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 4647389..4647953 Replicon chromosome
Accession NZ_CP102177
Organism Pseudomonas corrugata strain B21-055

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag LOY64_RS20410 Protein ID WP_055137158.1
Coordinates 4647389..4647676 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag LOY64_RS20415 Protein ID WP_055137159.1
Coordinates 4647666..4647953 (-) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LOY64_RS20380 (LOY64_20395) 4642564..4643469 + 906 WP_024776437.1 hypothetical protein -
LOY64_RS20385 (LOY64_20400) 4643652..4643852 - 201 WP_024776436.1 hypothetical protein -
LOY64_RS20390 (LOY64_20405) 4643963..4644508 - 546 WP_024776435.1 DUF4410 domain-containing protein -
LOY64_RS20395 (LOY64_20410) 4644669..4644959 - 291 WP_265068113.1 hypothetical protein -
LOY64_RS20405 (LOY64_20420) 4646561..4646992 - 432 WP_055137156.1 hypothetical protein -
LOY64_RS20410 (LOY64_20425) 4647389..4647676 - 288 WP_055137158.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
LOY64_RS20415 (LOY64_20430) 4647666..4647953 - 288 WP_055137159.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
LOY64_RS20425 (LOY64_20440) 4648754..4650037 + 1284 WP_053194367.1 FAD-binding oxidoreductase -
LOY64_RS20430 (LOY64_20445) 4650078..4650974 - 897 WP_265068114.1 PhzF family phenazine biosynthesis protein -
LOY64_RS20435 (LOY64_20450) 4650987..4651616 - 630 WP_265068115.1 LysE family translocator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-85)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-71)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10942.89 Da        Isoelectric Point: 10.7498

>T253282 WP_055137158.1 NZ_CP102177:c4647676-4647389 [Pseudomonas corrugata]
MAVEYGVEWDPKALKELRKLDGAIRLQFLRKLQERQAAPRVPGDALHGMKDCYKIKLRGAGYRLVYRVEDKRIVILVLAV
GKRERSSVYNSAKSR

Download         Length: 288 bp

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10254.74 Da        Isoelectric Point: 4.4000

>AT253282 WP_055137159.1 NZ_CP102177:c4647953-4647666 [Pseudomonas corrugata]
MQNILADVAVSVSELKKNPSSVLNGANGLPVAVLNHNRVMGYMVPANVYEAMVERLDELELVQLVKARLDANETPVRVSL
NDLIGEAEADIANGR

Download         Length: 288 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References