Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 4184865..4185429 Replicon chromosome
Accession NZ_CP102175
Organism Pseudomonas corrugata strain B21-061

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag LOY65_RS17935 Protein ID WP_055137158.1
Coordinates 4184865..4185152 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag LOY65_RS17940 Protein ID WP_055137159.1
Coordinates 4185142..4185429 (-) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LOY65_RS17905 (LOY65_17910) 4180049..4180954 + 906 WP_024776437.1 hypothetical protein -
LOY65_RS17910 (LOY65_17915) 4181137..4181337 - 201 WP_024776436.1 hypothetical protein -
LOY65_RS17915 (LOY65_17920) 4181448..4181993 - 546 WP_053194322.1 DUF4410 domain-containing protein -
LOY65_RS17920 (LOY65_17925) 4182154..4182444 - 291 WP_024776434.1 hypothetical protein -
LOY65_RS17930 (LOY65_17935) 4184046..4184477 - 432 WP_055137156.1 hypothetical protein -
LOY65_RS17935 (LOY65_17940) 4184865..4185152 - 288 WP_055137158.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
LOY65_RS17940 (LOY65_17945) 4185142..4185429 - 288 WP_055137159.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
LOY65_RS17950 (LOY65_17955) 4186231..4187514 + 1284 WP_053194367.1 FAD-binding oxidoreductase -
LOY65_RS17955 (LOY65_17960) 4187555..4188451 - 897 WP_238545193.1 PhzF family phenazine biosynthesis protein -
LOY65_RS17960 (LOY65_17965) 4188464..4189093 - 630 WP_208554830.1 LysE family translocator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4176416..4185429 9013


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-85)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-71)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10942.89 Da        Isoelectric Point: 10.7498

>T253274 WP_055137158.1 NZ_CP102175:c4185152-4184865 [Pseudomonas corrugata]
MAVEYGVEWDPKALKELRKLDGAIRLQFLRKLQERQAAPRVPGDALHGMKDCYKIKLRGAGYRLVYRVEDKRIVILVLAV
GKRERSSVYNSAKSR

Download         Length: 288 bp

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10254.74 Da        Isoelectric Point: 4.4000

>AT253274 WP_055137159.1 NZ_CP102175:c4185429-4185142 [Pseudomonas corrugata]
MQNILADVAVSVSELKKNPSSVLNGANGLPVAVLNHNRVMGYMVPANVYEAMVERLDELELVQLVKARLDANETPVRVSL
NDLIGEAEADIANGR

Download         Length: 288 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References