Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) kacAT/DUF1778(antitoxin)
Location 4604116..4604926 Replicon chromosome
Accession NZ_CP102077
Organism Klebsiella pneumoniae strain 5589

Toxin (Protein)


Gene name KacT Uniprot ID A0A0H3GMP0
Locus tag NOV87_RS22380 Protein ID WP_002887280.1
Coordinates 4604116..4604649 (-) Length 178 a.a.

Antitoxin (Protein)


Gene name KacA Uniprot ID J2E9Q7
Locus tag NOV87_RS22385 Protein ID WP_002887278.1
Coordinates 4604660..4604926 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NOV87_RS22375 (4602948) 4602948..4604069 + 1122 WP_009309849.1 cupin domain-containing protein -
NOV87_RS22380 (4604116) 4604116..4604649 - 534 WP_002887280.1 type II toxin-antitoxin system toxin KacT Toxin
NOV87_RS22385 (4604660) 4604660..4604926 - 267 WP_002887278.1 type II toxin-antitoxin system antitoxin KacA Antitoxin
NOV87_RS22390 (4605029) 4605029..4606462 - 1434 WP_023288193.1 Cu(+)/Ag(+) sensor histidine kinase -
NOV87_RS22395 (4606452) 4606452..4607135 - 684 WP_032105399.1 copper response regulator transcription factor CusR -
NOV87_RS22400 (4607308) 4607308..4608693 + 1386 WP_032431458.1 efflux transporter outer membrane subunit -
NOV87_RS22405 (4608711) 4608711..4609016 + 306 WP_032432083.1 cation efflux system protein CusF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(91-151)

Antitoxin

Vibrio phage ICP1, Orf50

(2-86)


Sequences

Toxin        


Download         Length: 178 a.a.        Molecular weight: 19838.70 Da        Isoelectric Point: 5.2614

>T253152 WP_002887280.1 NZ_CP102077:c4604649-4604116 [Klebsiella pneumoniae]
MEQQLTIEMIADAFSYDITGFDCGEEALNTFLKEHLKRQHDGQILRGYALVSGDTVPRLLGYYTLSGSCFERGMLPSKTQ
QKKIPYQNAPSVTLGRLAIDKSVQGQGWGEMLVAHVMRVVWGASKAVGIYGLFVEALNEKAKAFYLRLGFIQLVDENSNL
LFYPTKSIEQLFTDDES

Download         Length: 534 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9996.46 Da        Isoelectric Point: 10.1757

>AT253152 WP_002887278.1 NZ_CP102077:c4604926-4604660 [Klebsiella pneumoniae]
MPALKKQRIDLRLTDDDKSIIEEAAAISNQTITQFVVASASERAAEVIEQHRRMVLNEQSWSLVMEAITQPPAPNDRLKR
AAKRLQTR

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 5ZGN
PDB 5XUN

Antitoxin

Source ID Structure
PDB 5ZGN
AlphaFold DB A0A0H3GLZ1

References