Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2220269..2220537 | Replicon | chromosome |
| Accession | NZ_CP101925 | ||
| Organism | Escherichia coli strain Seattle 1946 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2220397..2220499 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2220269..2220537 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NP429_RS10390 | 2216821..2217483 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NP429_RS10395 | 2217507..2218163 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NP429_RS10400 | 2218266..2218496 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NP429_RS10405 | 2218635..2219009 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NP429_RS10410 | 2219013..2219885 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| NP429_RS10415 | 2219898..2220239 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2220269..2220537 | - | 269 | - | - | Antitoxin |
| - | 2220397..2220499 | + | 103 | - | - | Toxin |
| NP429_RS10420 | 2220634..2221290 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| NP429_RS10425 | 2221291..2221482 | - | 192 | WP_001317886.1 | YebW family protein | - |
| NP429_RS10430 | 2221587..2221823 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NP429_RS10435 | 2221941..2223380 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T252992 NZ_CP101925:2220397-2220499 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT252992 NZ_CP101925:c2220537-2220269 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
