Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1967383..1967654 | Replicon | chromosome |
| Accession | NZ_CP101922 | ||
| Organism | Escherichia coli strain JCC-EE 7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1967513..1967616 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1967383..1967654 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NP442_RS09460 | 1963938..1964600 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| NP442_RS09465 | 1964624..1965280 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NP442_RS09470 | 1965382..1965612 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NP442_RS09475 | 1965751..1966125 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NP442_RS09480 | 1966129..1967001 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| NP442_RS09485 | 1967014..1967355 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1967383..1967654 | - | 272 | - | - | Antitoxin |
| - | 1967513..1967616 | + | 104 | - | - | Toxin |
| NP442_RS09490 | 1967751..1968407 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| NP442_RS09495 | 1968408..1968599 | - | 192 | WP_001338167.1 | YebW family protein | - |
| NP442_RS09500 | 1968704..1968940 | - | 237 | WP_001338166.1 | YebV family protein | - |
| NP442_RS09505 | 1969058..1970497 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T252973 NZ_CP101922:1967513-1967616 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT252973 NZ_CP101922:c1967654-1967383 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
